Noble, J E; Hsiao, Y-W; Kepiro, I E; de Santis, E; Hoose, A; Augagneur, C; Lamarre, B; Briones, A; Hammond, K; Bray, D J; Crain, J; Ryadnov, M G (2024) A non-linear peptide topology for synthetic virions. ACS Nano, 18 (43). pp. 29956-29967.
Hammond, K; Cipcigan, F; Al Nahas, K; Losasso, V; Lewis, H; Cama, J; Martelli, F; Simcock, P W; Fletcher, M; Ravi, J; Stansfeld, P J; Pagliara, S; Hoogenboom, B W; Keyser, U F; Sansom, M S P; Crain, J; Ryadnov, M G (2021) Switching Cytolytic Nanopores into Antimicrobial Fractal Ruptures by a Single Side Chain Mutation. ACS Nano, 15 (6). pp. 9679-9689.
Simcock, P W; Bublitz, M; Cipcigan, F; Ryadnov, M G; Crain, J; Stansfeld, P J; Sansom, M S P (2021) Membrane Binding of Antimicrobial Peptides Is Modulated by Lipid Charge Modification. Journal of Chemical Theory and Computation, 17 (2). pp. 1218-1228. ISSN 1549-9618
Simcock, P W; Sansom, M S; Stansfeld, P J; Bublitz, M; Crain, J; Ryadnov, M G; Cipcigan, F (2020) Cationic Antimicrobial Peptides have Reduced Binding to MprF-Modified Membranes. Biophysical Journal, 118 (3). 237a ISSN 00063495
Pfeil, M P; Pyne, A L B; Losasso, V; Ravi, J; Lamarre, B; Faruqui, N; Alkassem, H; Hammond, K; Judge, P J; Winn, M; Martyna, G J; Crain, J; Watts, A; Hoogenboom, B; Ryadnov, M G (2018) Author Correction: Tuneable poration: host defense peptides as sequence probes for antimicrobial mechanisms (vol 8, 14926, 2018). Scientific Reports, 8. 17266 ISSN 2045-2322
Pfeil, M P; Pyne, A L B; Losasso, V; Ravi, J; Lamarre, B; Faruqui, N; Alkassem, H; Hammond, K; Judge, P J; Winn, M; Martyna, G J; Crain, J; Watts, A; Hoogenboom, B W; Ryadnov, M G (2018) Tuneable poration: host defense peptides as sequence probes for antimicrobial mechanisms. Scientific Reports, 8 (1). 14926 ISSN 2045-2322
Cipcigan, F; Carrieri, A P; Pyzer-Knapp, E O; Krishna, R; Hsiao, Y-W; Winn, M; Ryadnov, M G; Edge, C; Martyna, G; Crain, J (2018) Accelerating molecular discovery through data and physical sciences: Applications to peptide-membrane interactions. The Journal of Chemical Physics, 148 (24). 241744 ISSN 0021-9606
Pyne, A; Pfeil, M P; Bennett, I*; Ravi, J; Iavicoli, P*; Lamarre, B; Roethke, A*; Ray, S; Jiang, H B*; Bella, A; Reisinger, B*; Yin, D; Little, B*; Munoz-Garcia, J C*; Cerasoli, E; Judge, P J*; Faruqui, N; Calzolai, L*; Henrion, A*; Martyna, G J*; Grovenor, C R M*; Crain, J; Hoogenboom, B W*; Watts, A*; Ryadnov, M G (2017) Engineering monolayer poration for rapid exfoliation of microbial membranes. Chem. Sci., 8 (2). pp. 1105-1115.
Cipcigan, F S*; Sokhan, V P; Crain, J; Martyna, G J* (2016) Electronic coarse graining enhances the predictive power of molecular simulation allowing challenges in water physics to be addressed. J. Comput. Phys., 326. pp. 222-233.
Henihan, G*; Schulze, H*; Corrigan, D K*; Giraud, G*; Terry, J G*; Hardie, A*; Campbell, C J*; Walton, A J*; Crain, J; Pething, R*; Templeton, K E*; Mount, A R*; Bachmann, T T* (2016) Label- and amplification-free electrochemical detection of bacterial ribosomal RNA. Biosens. Bioelectron., 81. pp. 487-494.
Su, W T*; Kumar, N; Mignuzzi, S*; Crain, J; Roy, D (2016) Nanoscale mapping of excitonic processes in single-layer MoS2 using tip-enhanced photoluminescence microscopy. Nanoscale, 8 (20). pp. 10564-10569.
Stewart, M; Lepadatu, S; McCartney, L N; Cain, M G; Wright, L; Crain, J; Newns, D M*; Martyna, G J* (2015) Electrode size and boundary condition independent measurement of the effective piezoelectric coefficient of thin films. APL Mater., 3 (2). 026103
Cipcigan, F S*; Sokhan, V P; Jones, A P; Crain, J; Martyna, G J* (2015) Hydrogen bonding and molecular orientation at the liquid-vapour interface of water. Phys. Chem. Chem. Phys., 17 (14). pp. 8660-8669.
Sokhan, V P; Jones, A*; Cipcigan, F S*; Crain, J; Martyna, G J* (2015) Molecular-scale remnants of the liquid-gas transition in supercritical polar fluids. Phys. Rev. Lett., 115 (11). 117801
Sokhan, V P; Jones, A P*; Cipcigan, F S*; Crain, J; Martyna, G J* (2015) Signature properties of water: their molecular electronic origins. Proc. Natl. Acad. Sci. USA, 112 (20). pp. 6341-6346.
Magdau, I B; Liu, X H*; Kuroda, M A*; Shaw, T M*; Crain, J; Soloman, P M*; Newns, D M*; Martyna, G J* (2015) The piezoelectronic stress transduction switch for a very large-scale integration, low voltage sensor computation, and radio frequency application. Appl. Phys. Lett., 107 (7). 073505
McCartney, L N; Wright, L; Cain, M G; Crain, J; Martyna, G J*; Newns, D M* (2014) Methods for determining piezoelectric properties of thin epitaxial films: theoretical foundations. J. Appl. Phys., 116 (1). 014104
Mcvey, A*; Crain, J (2014) Nonlinear optical methods for cellular imaging and localization. Methods, 68 (2). pp. 371-377.
Ryan, L; Lamarre, B; Diu, T*; Ravi, J; Judge, P J*; Temple, A*; Carr, M*; Cerasoli, E; Su, B*; Jenkinson, H F*; Martyne, G*; Crain, J; Watts, A*; Ryadnov, M G (2013) Anti-antimicrobial peptides folding-mediated host defense antagonists. J. Biol. Chem., 288 (28). pp. 20162-20172.
Syed, S N*; Schulze, H*; Macdonald, D*; Crain, J; Mount, A R*; Bachmann, T T* (2013) Cyclic denaturation and renaturation of double-stranded DNA by redox-state switching of DNA intercalators. J. Am. Chem. Soc., 135 (14). pp. 5399-5407.
Corrigan, D K*; Schulze, H*; Henihan, G*; Hardie, A*; Ciani, I*; Giraud, G*; Terry, J G*; Walton, A J*; Pethig, R*; Ghazal, P*; Crain, J; Campbell, C J*; Templeton, K E*; Mount, A R*; Bachmann, T T* (2013) Development of a PCR-free electrochemical point of care test for clinical detection of Methicillin Resistant Staphylococcus Aureus (MRSA). Analyst, 138 (22). pp. 6997-7005.
Jones, A; Cipcigan, F*; Sokhan, V P; Crain, J; Martyna, G J* (2013) Electronically coarse-grained model for water. Phys. Rev. Lett., 110 (22). 227801
Rakowska, P D; Jiang, H B*; Ray, S; Pyne, A; Lamarre, B; Carr, M*; Judge, P J*; Ravi, J; Gerling, U I M*; Koksch, B*; Martyna, G J*; Hoogenboom, B W*; Watts, A*; Crain, J; Grovenor, C R M*; Ryadnov, M G (2013) Nanoscale imaging reveals laterally expanding antimicrobial pores in lipid bilayers. Proc. Natl. Acad. Sci. USA, 220 (22). pp. 8918-8923.
Ciani, I*; Schulze, H*; Corrigan, D K*; Henihan, G*; Giraud, G*; Terry, J G*; Walton, A J*; Pethig, R*; Ghazal, P*; Crain, J; Campbell, C J*; Bachmann, T T*; Mount, A R* (2012) Development of immunosensors for direct detection of three wound infection biomarkers at point of care using electrochemical impedance spectroscopy. Biosens. Bioelectron., 31 (1). pp. 413-418.
Corrigan, D K*; Schulze, H*; Henihan, G*; Ciani, I*; Giraud, G*; Terry, J G*; Walton, A J*; Pethig, R*; Ghazal, P*; Crain, J; Campbell, C J*; Mount, A R*; Bachmann, T T* (2012) Imedimetric detection of single-stranded PCR products derived from methicillin resistant Staphylococcus aureus (MRSA) isolates. Biosens. Bioelectron., 34 (1). pp. 178-184.
Cerasoli, E; Ravi, J; Gregor, C*; Hussain, R*; Siligardi, G*; Martyna, G*; Crain, J; Ryadnov, M G (2012) Membrane mediated regulation in free peptides of HIV-1 gp41: minimal modulation of the hemifusion phase.. Phys. Chem. Chem. Phys., 14 (3). pp. 1277-1285.
Gregor, C R*; Cerasoli, E; Schouten, J*; Ravi, J; Slootstra, J*; Horgan, A M; Martyna, G J*; Ryadnov, M G; Davis, P*; Crain, J (2011) Antibody recognition of a human chorionic gonadrtropin epitope (hCG beta(66-80)) depends on local structure retained in the free peptide. J. Biol. Chem., 286 (28). pp. 25016-25026.
Gregor, C R*; Cerasoli, E; Tulip, P R*; Ryadnov, M G; Martyna, G J*; Crain, J (2011) Autonomous folding in the membrane proximal HIV peptide gp41(659-671): pH tuneability at micelle interfaces. Phys. Chem. Chem. Phys., 13 (1). pp. 127-135.
Giraud, G*; Pethig, R*; Schulze, H*; Henihan, G*; Terry, J G*; Menachery, A*; Ciani, I*; Corrigan, D*; Campbell, C J*; Mount, A R*; Ghazal, P*; Walton, A J*; Crain, J; Bachmann, T T* (2011) Dielectrophoretic manipulation of ribosomal RNA. Biomicrofluidics, 5 (2). 024116
Ember, S W J*; Schulze, H*; Ross, A J*; Luby, J*; Khondoker, M*; Giraud, G*; Terry, J G*; Ciani, I*; Tlili, C*; Crain, J; Walton, A J*; Mount, A R*; Ghazal, P*; Bachmann, T T*; Campbell, C J* (2011) Fast DNA and protein microarray tests for the diagnosis of hepatitis C virus infection on a single platform. Anal. Bioanal. Chem., 401 (8). pp. 2549-2559.
Schulze, H*; Ross, A J*; Ember, S W J*; Luby, J*; Khondoker, M*; Giraud, G*; Ciani, I*; Tlili, C*; Papale, D*; Terry, J G*; Mount, A R*; Walton, A J*; Crain, J; Ghazal, P*; Bachmann, T T*; Campbell, C J* (2011) Peptide-tags for enhanced DNA microarray performance. Faraday Discuss., 149. pp. 201-210.
McGuinness, C D*; Keszenman-Pereyra, D*; Dickinson, P*; Campbell, C J*; Maltman, B A*; Bachmann, T T*; Ghazal, P*; Crain, J (2010) Base pair mismatch identification with DNA nanoswitch and long lifetime acridine fluorophore. Sens. Actuators B, Chem., 148 (1). pp. 342-346.
Tulip, P R*; Gregor, C R*; Troitzsch, R Z*; Martyna, G J*; Cerasoli, E; Tranter, G*; Crain, J (2010) Conformational plasticity in an HIV-1 antibody epitope. J. Phys. Chem. B, 114 (23). pp. 7942-7950.
McGuinness, C D*; Nishimura, M K Y*; Keszenman-Pereyra, D*; Dickinson, P*; Campbell, C J*; Bachmann, T T*; Ghazal, P*; Crain, J (2010) Detection of single nucleotide polymorphisms using a DNA Holliday junction nanoswitch-a high-throughput fluorescence lifetime assay. Mol. Biosyst., 6 (2). pp. 386-390.
Robinson, I*; Ochsenkuhn, M A*; campbell, C J*; Giraud, G*; Hossack, W J*; Arlt, J*; Crain, J (2010) Intracellular imaging of host-pathogens interactions using combined CARS and two-photon fluorescence microscopies. J. Biophoton., 3 (3). pp. 138-146.
Dougan, L*; Crain, J; Finney, J L*; Soper, A K* (2010) Molecular self-assembly in a model amphiphile system. Phys. Chem. Chem. Phys., 12 (35). pp. 10221-10229.
Giraud, G*; Bachmann, T T*; Campbell, C J*; Mount, A R*; Ghazal, P*; Khondoker, M R*; Ember, S W J*; Ciani, C*; Walton, A J*; Terry, J G*; Crain, J (2010) Solution state hybridization detection using time-resolved fluorescence anisotropy of quantum dot-DNA bioconjugates. Chem. Phys. Lett., 484 (4-6). pp. 309-314.
Ryadnov, M G; Cerasoli, E; Martyna, G J*; Crain, J (2010) Translational biophysics: the physical sciences in molecular medicine. Future Med. Chem., 2 (11). pp. 1633-1639.
Giraud, G*; Schulze, H*; Bachmann, T T*; Campbell, C J*; Mount, A R*; Ghazal, P*; Khondoker, M R*; Ross, A J*; Ember, S W J*; Ciani, I*; Tlili, C*; Walton, A J*; Terry, J G*; Crain, J (2009) Fluorescence Lifetime Imaging of Quantum Dot Labeled DNA Microarrays. Int. J. Mol. Sci., 10 (4). pp. 1930-1941.
Schulze, H*; Giraud, G*; Crain, J; Bachmann, T T* (2009) Multiplexed optical pathogen detection with lab-on-a-chip devices. J. Biophotonics, 2 (4). pp. 199-211.
Jones, A*; Thompson, A*; Crain, J; Muser, M H*; Martyna, G J* (2009) Norm-conserving diffusion Monte Carlo method and diagrammatic expansion of interacting drude oscillators: application to solid xenon. Phys. Rev. B, 79 (14). 144119
Troitzsch, R Z*; Vass, H*; Hossack, W J*; Martyna, G J*; Crain, J (2008) Molecular mechanisms of cryoprotection in aqueous proline: light scattering and molecular dynamics simulations. J. Phys. Chem. B, 112 (14). pp. 4290-4297.